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2008
Li, P.; Oinn, T.; Soiland, S. & Kell, D. B.Automated manipulation of systems biology models using libSBML within Taverna workflowsBioinformatics 24(2), 287--289
Li, P.; Castrillo, J.; Velarde, G.; Wassink, I.; Soiland-Reyes, S.; Owen, S.; Withers, D.; Oinn, T.; Pocock, M.; Goble, C.; Oliver, S. & Kell, D. Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray dataBMC Bioinformatics 9 (334)
Lanzén, A. & Oinn, T.The Taverna Interaction Service: enabling manual interaction in workflowsBioinformatics 24(8), 1118--1120
2007
Turi, D.; Missier, P.; Goble, C.; De Roure, D. & Oinn, T.Taverna Workflows: Syntax and Semanticsin 'Proc. IEEE International Conference on e-Science and Grid Computing', pp. 441--448
Oinn, T.; Li, P.; Kell, D. B.; Goble, C.; Goderis, A.; Greenwood, M.; Hull, D.; Stevens, R.; Turi, D. & Zhao, J.Taverna/myGrid: Aligning a Workflow System with the Life Sciences Communityin I Taylor; E Deelman; D Gannon & M Shields, ed.,'Workflows for e-Science', Springer-Verlag
Goble, C.; Wolstencroft, K.; Goderis, A.; Hull, D.; Zhao, J.; Alper, P.; Lord, P.; Wroe, C.; Belhajjame, K.; Turi, D.; Stevens, R.; Oinn, T. & DeRoure, D.Semantic Web - Revolutionizing Knowledge Discovery in the Life SciencesSpringer US, chapter Knowledge Discovery for Biology with Taverna, pp. 355-395
Gibson, A.; Gamble, M.; Wolstencroft, K.; Oinn, T. & Goble, C.The Data Playground: An Intuitive Workflow Specification Environmentin 'Proc. IEEE International Conference on e-Science and Grid Computing', pp. 59--68Awarded best paper prize at the 3rd IEEE International Converence on e-Science and Grid Computing, December 10-13, 2007, Bangalore, India
2006
Hull, D.; Wolstencroft, K.; Stevens, R.; Goble, C.; Pocock, M. R.; Li, P. & Oinn, T.Taverna: a tool for building and running workflows of servicesNucleic Acids Res 34 (Web Server issue), W729--W732
Albeck, S.; Alzari, P.; Andreini, C.; Banci, L.; Berry, I. M.; Bertini, I.; Cambillau, C.; Canard, B.; Carter, L.; Cohen, S. X.; Diprose, J. M.; Dym, O.; Esnouf, R. M.; Felder, C.; Ferron, F.; Guillemot, F.; Hamer, R.; Jelloul, M. B.; Laskowski, R. A.; Laurent, T.; Longhi, S.; Lopez, R.; Luchinat, C.; Malet, H.; Mochel, T.; Morris, R. J.; Moulinier, L.; Oinn, T.; Pajon, A.; Peleg, Y.; Perrakis, A.; Poch, O.; Prilusky, J.; Rachedi, A.; Ripp, R.; Rosato, A.; Silman, I.; Stuart, D. I.; Sussman, J. L.; Thierry, J. C.; Thompson, J. D.; Thornton, J. M.; Unger, T.; Vaughan, B.; Vranken, W.; Watson, J. D.; Whamond, G. & Henrick, K.SPINE bioinformatics and data-management aspects of high-throughput structural biology.Acta Crystallogr D Biol Crystallogr 62(Pt 10), 1184--1195
2005
Wolstencroft, K.; Oinn, T.; Goble, C.; Ferris, J.; Wroe, C.; Lord, P.; Glover, K. & Stevens, R.Panoply of utilities in Taverna in 'Proc. First International Conference on e-Science and Grid Computing', pp. 7 pp.--
Oinn, T.; Greenwood, M.; Addis, M.; Alpdemir, M. N.; Ferris, J.; Glover, K.; Goble, C.; Goderis, A.; Hull, D.; Marvin, D.; Li, P.; Lord, P.; Pocock, M. R.; Senger, M.; Stevens, R.; Wipat, A. & Wroe, C.Taverna: Lessons in creating a workflow environment for the life sciencesConcurrency and Computation: Practice and Experience Grid Workflow 18(10), 1067 - 1100
Lanzén, A.; Grindhaug, S.; Oinn, T. & Puntervoll, P.An Automatic Genome Annotation PipelineNETTAB2005: Poster
Alpdemir, N.; Mukherjee, A.; Paton, N.; Fernandes, A.; Watson, P.; Glover, K.; Greenhalgh, C.; Oinn, T. & Tipney, H.Advances in Grid Computing - EGC 2005Springer Berlin / Heidelberg, chapter Contextualised Workflow Execution in MyGrid, pp. 444-453
2004
Stevens, R. D.; Tipney, H. J.; Wroe, C. J.; Oinn, T. M.; Senger, M.; Lord, P. W.; Goble, C. A.; Brass, A. & Tassabehji, M.Exploring Williams-Beuren syndrome using myGridBioinformatics 20(suppl_1), i303-310
Stevens, R.; Tipney, H.; Wroe, C.; Oinn, T.; Senger, M.; Lord, P.; Goble, C.; Brass, A. & Tassabehji, M.Genome Science performed with e-Science Tools in 'Proceedings UK e-Science All Hands Meeting 2004'
Oinn, T.; Greenwood, M. & Goble, C.Delivering web service coordination capability to users in 'Proceedings of the 13th international World Wide Web conference on Alternate track papers & posters'
Oinn, T.; Addis, M.; Ferris, J.; Marvin, D.; Senger, M.; Greenwood, M.; Carver, T.; Glover, K.; Pocock, M. R.; Wipat, A. & Li, P.Taverna: a tool for the composition and enactment of bioinformatics workflowsBioinformatics 20(17), 3045-3054
Li, P.; Hayward, K.; Jennings, C.; Owen, K.; Oinn, T.; Stevens, R.; Pearce, S. & Wipat, A.Association of variations on i kappa b-epsilon with graves' disease using classical and mygrid methodologiesin 'Proc UK e-Science programme All Hands Conference'
2003
Stevens, R.; Lord, P.; Oinn, T. & Li, P.Performing in silico experiments on the Grid using myGridISMB: Poster
Senger, M.; Rice, P. & Oinn, T.Soaplab - a unified Sesame door to analysis toolsin 'Proc UK e-Science programme All Hands Conference'
Oinn, T. M.Talisman - rapid application development for the gridBioinformatics 19(suppl_1), i212-214
Moreau, L.; Miles, S.; Goble, C.; Greenwood, M.; Dialani, V.; Addis, M.; Alpdemir, N.; Cawley, R.; De Roure, D.; Ferris, J.; Gaizauskas, R.; Glover, K.; Greenhalgh, C.; Li, P.; Liu, X.; Lord, P.; Luck, M.; Marvin, D.; Oinn, T.; Paton, N.; Pettifer, S.; Radenkovic, M.; Roberts, A.; Robinson, A.; Rodden, T.; Senger, M.; Sharman, N.; Stevens, R.; Warboys, B.; Wipat, A. & Wroe, C.On the use of agents in a BioInformatics gridin 'Proc. 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid CCGrid 2003', pp. 653--660
Greenwood, M.; Goble, C.; Stevens, R.; Zhao, J.; Addis, M.; Marvin, D.; Moreau, L. & Oinn, T.Provenance of e-Science Experiments - experience from Bioinformaticsin 'Proc UK e-Science programme All Hands Conference'
Camon, E.; Magrane, M.; Barrell, D.; Binns, D.; Fleischmann, W.; Kersey, P.; Mulder, N.; Oinn, T.; Maslen, J.; Cox, A. & Apweiler, R.The Gene Ontology Annotation (GOA) Project: Implementation of GO in SWISS-PROT, TrEMBL, and InterProGenome Res. 13(4), 662-672
Addis, M.; Ferris, J.; Greenwood, M.; Li, P.; Marvin, D.; Oinn, T. & Wipat, A.Experiences with e-Science workflow specification and enactment in bioinformaticsin 'Proc UK e-Science programme All Hands Conference'
2002
Moreau, L.; Miles, S.; Goble, C.; Greenwood, M.; Dialani, V.; Addis, M.; Alpdemir, N.; Cawley, R.; Roure, D. D.; Ferris, J.; Gaizauskas, R.; Glover, K.; Greenhalgh, C.; Greenwood, M.; Li, P.; Liu, X.; Lord, P.; Luck, M.; Marvin, D.; Oinn, T.; Paton, N.; Pettifer, S.; Radenkovic, M. V.; Roberts, A.; Robinson, A.; Rodden, T.; Senger, M.; Sharman, N.; Stevens, R.; Warboys, B.; Watson, P. & Wroe, C.On the Use of Agents in a BioInformatics Gridin 'In Network Tools and Applications in Biology (NETTAB'2002) - Agents in Bioinformatics'
Kanapin, A.; Apweiler, R.; Biswas, M.; Fleischmann, W.; Karavidopoulou, Y.; Kersey, P.; Kriventseva, E. V.; Mittard, V.; Mulder, N.; Oinn, T.; Phan, I.; Servant, F. & Zdobnov, E.Interactive InterPro-based comparisons of proteins in whole genomesBioinformatics 18(2), 374-375
2001
Apweiler, R.; Attwood, T. K.; Bairoch, A.; Bateman, A.; Birney, E.; Biswas, M.; Bucher, P.; Cerutti, L.; Corpet, F.; Croning, M. D. R.; Durbin, R.; Falquet, L.; Fleischmann, W.; Gouzy, J.; Hermjakob, H.; Hulo, N.; Jonassen, I.; Kahn, D.; Kanapin, A.; Karavidopoulou, Y.; Lopez, R.; Marx, B.; Mulder, N. J.; Oinn, T. M.; Pagni, M.; Servant, F.; Sigrist, C. J. A. & Zdobnov, E. M.The InterPro database, an integrated documentation resource for protein families, domains and functional sitesNucl. Acids Res. 29(1), 37-40